Package: ecolottery 2.0.0

ecolottery: Coalescent-Based Simulation of Ecological Communities

Coalescent-Based Simulation of Ecological Communities as proposed by Munoz et al. (2018) <doi:10.1111/2041-210X.12918>. The package includes a tool for estimating parameters of community assembly by using Approximate Bayesian Computation.

Authors:François Munoz [aut, cre], Matthias Grenié [aut], Pierre Denelle [aut], Elizabeth Barthelemy [aut], Adrien Taudière [ctb], Fabien Laroche [ctb], Caroline Tucker [ctb], Cyrille Violle [ctb]

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# Install 'ecolottery' in R:
install.packages('ecolottery', repos = c('https://frmunoz.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/frmunoz/ecolottery/issues

On CRAN:

6.18 score 15 stars 1 packages 17 scripts 528 downloads 1 mentions 18 exports 89 dependencies

Last updated 2 years agofrom:cbd4fe296d. Checks:OK: 1 WARNING: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKOct 26 2024
R-4.5-winWARNINGOct 26 2024
R-4.5-linuxWARNINGOct 26 2024
R-4.4-winWARNINGOct 26 2024
R-4.4-macWARNINGOct 26 2024
R-4.3-winWARNINGOct 26 2024
R-4.3-macWARNINGOct 26 2024

Exports:abundcoalesccoalesc_abccoalesc_abc_stdcoalesc_easyABCdo.simul.coalescforwardgauss_limitgenerate_priorget_number_of_gensinitial_checkspickpick.immigratepick.mutateplot_commprdch4coalescsumstatstcor

Dependencies:abcabc.dataabindade4apecliclusterclusterGenerationcodacodetoolscolorspacecombinatcpp11data.tableDEoptimdeSolvedigestdoParallelEasyABCexpmfansifarverfastmatchFDforeachgeigergenericsgeometryggplot2gluegtablehillRigraphisobanditeratorslabelinglatticelazyevallhslifecyclelinproglocfitlpSolvemagicmagrittrmapsMASSMatrixMatrixModelsmgcvmnormtmomentsmunsellmvtnormncbitnlmennetnumDerivoptimParallelpbapplypermutephangornphytoolspillarpixmappkgconfigplsplyrquadprogquantregR6RColorBrewerRcppRcppArmadilloRcppProgressrlangscalesscatterplot3dspSparseMsubplexsurvivaltensorAtibbleutf8vctrsveganviridisLitewithr

coalesc_abc function with a site-species matrix: example with Barro-Colorado dataset.

François MUNOZ and Pierre DENELLE

Rendered fromBarro_Colorado.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2019-04-03
Started: 2017-04-21

Appendix 1: basic functions and examples

François MUNOZ and Pierre DENELLE

Rendered fromcoalesc_vignette.Rmdusingknitr::rmarkdownon Oct 26 2024.

Last update: 2020-04-02
Started: 2016-12-07